Auto71%Harbor: pendingAbstract ReasoningKnowledge & Reasoning

FoldBench

FoldingCorpus / Fold2Reason Benchmark

A protein-derived question-answer dataset and post-training recipe evaluating general reasoning transfer from structural supervision across spatial, graph, scientific, and general benchmarks.

How to run

ltb · foldbench
$ npm i -g lettokenburn-cli
$ ltb bench info foldbench

External harness. No Harbor adapter has been generated for this benchmark yet. `ltb bench info` prints the known links.

Runs happen on your machine with your own subscription; only the score summary is pushed. CLI docs

Scores

2 sourced entries
HarnessSourceConfidenceLink
InternVL3.5-8B-Instruct0.2N/AIndependentmediumSep 30, 2026arxiv.org
qwen3.5-9B0.2N/AIndependentmediumSep 30, 2026arxiv.org

Every number links to where it was published. Low-confidence rows are muted and need per-cell verification.

Reproduced by the community

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About

Content & Construction: The benchmark utilizes FoldingCorpus, a dataset constructed by applying 12 deterministic structural operators to the OpenFold monomer short-protein collection. It generates question-answer pairs verified against source coordinates in the Protein Data Bank (wwPDB). FoldBench evaluates models post-trained with this data via discrete language head supervision and continuous geometry decoding.

Scoring & Findings: Evaluation measures performance on 10 general-purpose benchmarks spanning spatial, graph, scientific, and reasoning categories. The primary metric is macro-average accuracy. Key findings show that training on protein structures improves broad reasoning capabilities (raising macro-accuracy from ~45% to ~48%), with positive gains across text, image, and video tasks compared to controls.